rs36243329 SNP Detail

Summary

• ID
  rs36243329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:27467107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTTGCA TTTGGCAGCT
  GATGATAAGG TTACCCCTGG CACTGAGTCA CTGAAGGCAG ATTGGGGAGC CCCTGGTTCT
  GGGATGTGGG TGATTCTCAG TTTACCAACC ATCAGGAATT AAGCTCTAGG GAAAAGGGCA
  TCAGATAACT GGATCAAAAA TGAGCGATAG CTAAGCATTT AGTCAGATGA ATTGAGTATC
  Y
  AAGCAAGGGA CATTATGAGA TCCCTGGAGG TAACCCCATG GATTAGGAAA GACAGGTTCT
  GGGGGAGCCT AGAGGTGAAG GGACCCCTTT GTGAGAGAAT GGCCAAGGAG ACAAGTCTCC
  GGGGATGACA TAGGTTTTGA TTAGAGACTC GGGGTGGGGT ACAGTCAAAA AAGAGGGGAA
  GGGAAGATAT TGTGTGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50660637	NES14019480	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36243329					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50660637	NES14019480	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:27467107 () rs orientation: forward

Symbol	Name	Function Class
Gm48901	predicted gene, 48901	640 bp downstream
Rr383113	regulatory region 383113	within coordinates