rs36243419 SNP Detail

Summary

• ID
  rs36243419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:121070362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTCTGTT TCAGAACAAG
  TGAGACGTCA AAATAAGAAA AGGGGTGGGT CTCACTGCAG ATACTTCAGT CTTTAAGAGA
  AGAAATGGTT CCCTGTGGTT AGCAAAAGAG CAGAGCTCAG ACTACCTCTG TTCAGAGCCT
  GAAGCACAAA GTTCTCCAGG GAGAAGAGGA GACCACACAG CCAACCCCAG GGTCTTCTTA
  Y
  CTCCTGGAAT GGCCACTCTT CTGGATAGCT TTATGTCAAC TTGACACACG CCAGAGTCAT
  CTGAGAGGAG GGAACATCAA TTAAGAAAAT GCCTCCACAC TGTAATTGGT AGGGGTGGCC
  CTAGCCTACA GTGGGTGATG CCATCTCTGG ACTGGTGGTC ATGGGTTCTA TAAGAAAATA
  GACTGAGCAA GACAGACGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51569548	NES14614199	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss324851456	CHEV_14_121232172	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36243419					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569548	NES14614199	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:121070362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6879	CpG island 6879	799 bp distal
Rr287003	regulatory region 287003	962 bp distal
Rr287004	regulatory region 287004	1239 bp proximal
Rr390218	regulatory region 390218	563 bp downstream
Rr404289	regulatory region 404289	850 bp downstream