rs36243473 SNP Detail

Summary

• ID
  rs36243473
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140843097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATCGGGG TGTTCCCGAT
  TCCTGTCTTA GAGTGTTTGT GTCCAGTAAG AGCTGTGCTA GCCTAGCCAG TTCTTGATTA
  TGAAAGTGAG TGCTGCAAAG GAGGCCTGGT GTGTAGGGAC TGGGGGTCAC CTTCTTTCAA
  GGGACTCTAC AAGGTCCACT AGAGACACTA TACAGCAAGG AGCAGACCTG ACCCAGGGCT
  S
  CACTGATTTT GAACTATTTA TTGGGAGTTG GGATTCTGAG TCAAGGCCAC TGACCCAGGT
  CCATGAGGAA GTGTTCGATG TCTTCGTAGA GACTGTTGGT GCTAGACAAG CACAAGCCGA
  GACTGCTGCT GTCCAGGGAG GACACACCCT CACGCTGCAC GCCCTCCAGG TATGCCTTGC
  ATACCCATGG CTCCAGCTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51935593	NES14951789	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36243473					SNP	C	C	C	C	C	C	C	C	C	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51935593	NES14951789	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140843097 () rs orientation: forward

Symbol	Name	Function Class
Irf7	interferon regulatory factor 7	within coordinates
Phrf1	PHD and ring finger domains 1	434 bp downstream
Rr154683	regulatory region 154683	1904 bp proximal
Rr166948	regulatory region 166948	1703 bp proximal
Tssr69941	transcription start site region 69941	within coordinates
Tssr75604	transcription start site region 75604	341 bp downstream
Tssr75605	transcription start site region 75605	499 bp downstream
Tssr75606	transcription start site region 75606	637 bp downstream
Tssr75607	transcription start site region 75607	713 bp downstream
Tssr75608	transcription start site region 75608	770 bp downstream
Tssr75609	transcription start site region 75609	788 bp downstream
Tssr75610	transcription start site region 75610	813 bp downstream
Tssr75611	transcription start site region 75611	1069 bp downstream
Tssr75612	transcription start site region 75612	1331 bp downstream