rs36243716 SNP Detail

Summary

• ID
  rs36243716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105213056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTCCCTC AAAAGCCCAC
  GTGTGAAAAC CACATCACTG TCTTAAGCCT TCTCTTAGTG CTTTCCTGGT GCCACCGTGT
  CCCCTGCTCT GGAGCCTCAC ACACCATCTA TGCAGCTGAG AGTGACCTTT CCTGGTCACT
  CTTTCCTGGT CTGGCTGATC TTCATCTAGC TCTAACACAT CTACTGCTAT TCATATTTCT
  Y
  AGTTCATATG ACACTCTCAC AGGAAGGCTA TGTTTTCTTT CTTTCCTGTT TTTACAGAGT
  GGGGTGGGTC AAGGAAACTG GTTTTTTTTT CTGTAGCCCT AGCTGGCCAG GTACTCACTT
  ATAGCTCACC TACTTGCAGC CAACCTGTTT CTGCTTCCCA AGTTCAGGGA TCATCAGTGC
  TGTCACCATG CCAGGCTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss51921066	NES14940202	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs36243716					SNP	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51921066	NES14940202	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105213056 () rs orientation: forward

Symbol	Name	Function Class
Apbb1	amyloid beta precursor protein binding family B member 1	within coordinates
Tssr74041	transcription start site region 74041	1626 bp downstream
Tssr74042	transcription start site region 74042	1651 bp downstream
Tssr74043	transcription start site region 74043	1722 bp downstream