rs36244338 SNP Detail

Summary

• ID
  rs36244338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8502102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGAGGGCT GGAGCACAAG ACTCCTCTAA CTGATTATAG
  ATGCCACAGC TCCACCAGCC AAGCCACCTC TTTCCTAGCC TCTTCCTATC AGCTCCAGCT
  Y
  CTGCTCCTTT GGGAAAACCT GTTAGCCACA CCTCATCTGT ATAATCCCCC AACCCACATC
  CAGGTTCACA CCCGCTCCCT CAGGGACCAG TGCCCTAACC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ
ss51776430	NES14543160	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ
rs36244338					SNP	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776430	NES14543160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8502102 () rs orientation: forward

Symbol	Name	Function Class
Gm59855	predicted gene, 59855	1487 bp upstream
Litafd	LITAF domain containing	327 bp downstream
Rr319307	regulatory region 319307	1699 bp proximal
Rr322150	regulatory region 322150	902 bp distal
Tssr137004	transcription start site region 137004	1359 bp downstream
Tssr139871	transcription start site region 139871	1487 bp upstream