rs36245092 SNP Detail

Summary

• ID
  rs36245092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114268555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG AGTCCCGGAG GTCCGTGCTC
  R
  GCGCAGGCAT GATCGGCCAG AAGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51798726	NES14715526	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	A	A	A		G	G	A	G		A
ss149107108	ENSMUSSNP4896347	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss321651940	CHEV_5_114580503	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36245092					SNP	G	G	G	G	G	G	G	G	A	A	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51798726	NES14715526	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114268555 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	within coordinates
Gm73237	predicted gene, 73237	within coordinates
Rr378486	regulatory region 378486	1747 bp downstream
Tssr48056	transcription start site region 48056	118 bp downstream
Tssr48057	transcription start site region 48057	50 bp downstream
Tssr48058	transcription start site region 48058	663 bp upstream
Tssr48059	transcription start site region 48059	690 bp upstream
Tssr48060	transcription start site region 48060	1716 bp upstream
Tssr52695	transcription start site region 52695	211 bp downstream
Tssr52696	transcription start site region 52696	1092 bp downstream
Ung	uracil DNA glycosylase	within coordinates