rs36245192 SNP Detail

Summary

• ID
  rs36245192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19918077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAGCTTAG ATGTAGATGT ATTAATCTGA CAATCTTTAT
  TTTTTTTCCA AATAAAGTGT GTTCCTGGAA TCTGTATGCA AAAGTATGTT CCCATAGAAA
  Y
  GGTGTTATGT TTAGAGGTTT GCTCGTATGA GGAAGAAAAA CTGGGAAATA GGTTAGTTGC
  AACCAACAGC AGAGAATAAA AATAAAGCAA CTGTAATGAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51072277	NES14365098	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36245192					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51072277	NES14365098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19918077 () rs orientation: forward

Symbol	Name	Function Class
Gpr141b	G protein-coupled receptor 141B	956 bp upstream
Tssr121608	transcription start site region 121608	1152 bp upstream
Tssr121609	transcription start site region 121609	1092 bp upstream
Tssr121610	transcription start site region 121610	953 bp upstream