rs36245408 SNP Detail

Summary

• ID
  rs36245408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52520929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCTCACT CAGCTGCCAA
  GTGCCCATGT CTGTCTTAAA CACATACCAA CATCTAGCAA AAGAAGTCAG TAGCTGAGGG
  AGTCAGGGGA AAAGAAAAGG CCCTTCGAGA AAGAGACCAT TGTGCCTCTT CAAACAAGAC
  TATTTTCTTT CTCATTTCTG CTCCCCTGCT GCGTTCTGAA GGTCACTGAC TGCGTCTGCA
  Y
  GAGCCAGGGA AGTCACGAAA GACATACTTG GCAAGCAGAA CCAGCAGTGG GAAAGGGACT
  GGGAGGTGGG GACAAGGAGA AGATGAAGTG GGGGAGGAGG GGGAAAAGGA GGAAGAGGAG
  AAGGGGAGGA AGAGGAGGAG GAAGAAAAAG AGGAGGAGAA AGGAATAAGA AGGGGAGAAG
  GAGACGGAGT AGGAAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51118300	NES13854519	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36245408					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51118300	NES13854519	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52520929 () rs orientation: forward

Symbol	Name	Function Class
Rr611420	regulatory region 611420	within coordinates
Rr611421	regulatory region 611421	215 bp proximal
Sod3	superoxide dismutase 3, extracellular	217 bp upstream
Tssr46168	transcription start site region 46168	325 bp upstream
Tssr46169	transcription start site region 46169	338 bp upstream
Tssr46170	transcription start site region 46170	369 bp upstream