rs36245440 SNP Detail

Summary

• ID
  rs36245440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:23116629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATCCCC ACGGTGCAGA
  CTCAATGATC ATAATAAATT GGTTGTTCTG GGTTGCTATG CACCAATAGT TAGCAGAATG
  CAGGCTAAAT TCTTACTTTC CAGTAACCTG GCTTGGAAAT ACAGGGCAGC AGTTCTGCAC
  AGACTTCTTG GCTTGATCCC TCTGGCGTCC TTTGAGACAA AACTGGCCAC ACAGATGAAC
  Y
  AGCTGCCTTA TCAATACCTC CCCTAACTTG GCTCCTAGGT TCTAATCTGT TCTCTTTCCA
  TCCTTCATTT GTAGCTGACA GCCTTACACC CCCCCCCCCC CTTCATTTCC CATTTGGACG
  GCAAATGCTT TTCAGCCCTC TTACCTCCGG GGCACAGGTT TCCTGTGAAC TCTCTGGAGC
  CACTTATGTA GTTAGCCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51994656	NES15009150	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36245440					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51994656	NES15009150	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:23116629 () rs orientation: forward

Symbol	Name	Function Class
Gm68239	predicted gene, 68239	within coordinates
Rr675323	regulatory region 675323	959 bp distal
Rr675324	regulatory region 675324	28 bp distal