rs36245709 SNP Detail

Summary

• ID
  rs36245709
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28168214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGCAGA GGCTGGGGTG
  GGGGAATCTC TGTGATCTTG AGGCCAGCCT AGTCTACAGA ATGAGTTCCA GACAAGCTAG
  GGCTACATAG TAAGTGAATC TCAAAACAAC ATTAAAAACA ACAACAACAA AACCCCTAGC
  AATTCTACAT GCAGTATTCA CTTACTGATT TAGTATGTGG GTGTGTATCC GCACGAGCTG
  S
  TGCAGTCACC CATATGTGAA TGCCGAGGTC AAAGGTAATG TTGGGTGTTT TCCTCTGTCA
  CCCCCCTCAT TTTTTGAGAC AGAGTCTCAT TGTAGCGCTG GCCAGTGAAC TCCAGTGTCC
  TCCACTATCC ACTTCTGCCT CCATGCTGGG TTTATAGATG ATTTCCTGAG TGTATTTGGG
  GGTCTGAACT GCCCCATGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887026	NES14904544	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36245709					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887026	NES14904544	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28168214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18706	CpG island 18706	832 bp distal
Lrfn1	leucine rich repeat and fibronectin type III domain containing 1	547 bp downstream
Rr644283	regulatory region 644283	1784 bp distal
Rr644284	regulatory region 644284	1667 bp distal
Tssr65486	transcription start site region 65486	887 bp downstream