rs36245799 SNP Detail

Summary

• ID
  rs36245799
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5898453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGGAAC CGATAAAGAA
  GCCCTGCCCC AAATTTGCCA GGCTCTTCTG GTGGGAAGGG GCCCATCTCT CACCCTTCCC
  CCACTGTTGC AAAAATCTGG AAGTGAACTC TTTTTATGAA AACAGATCTC ACCCAGTGGC
  TCCCTGTCTC CCTACAATCA TAAGCTCTTG TAGGCCAGGG CTGCAAAGTC ACCTCTCAAG
  K
  GAGCTCTAGC AATAAGTCAG TCTGTCCCAT CCCTCCCCCA ACTTGATTTG TGGGGGCAGG
  GTTTCTGTCT AGTGTGTCCT AGATCTCTGA GCCCACAGCT CTGGCAAGAC GTGGGCACCA
  GCGTGGATGA CTTCAGCTTA TATTTTCTAA AGGTCACTCT GAATCCTGCG GGCTCTTGGT
  AAATATTTGT GGACTGACTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577074	NES13648177	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36245799					SNP	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577074	NES13648177	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5898453 () rs orientation: forward

Symbol	Name	Function Class
Frmd8os	FERM domain containing 8, opposite strand	within coordinates
Gm59609	predicted gene, 59609	11 bp upstream
Gm59610	predicted gene, 59610	124 bp downstream
Rr370436	regulatory region 370436	within coordinates
Tssr154515	transcription start site region 154515	1641 bp downstream
Tssr154516	transcription start site region 154516	1565 bp downstream
Tssr154517	transcription start site region 154517	1539 bp downstream
Tssr154518	transcription start site region 154518	1515 bp downstream
Tssr154519	transcription start site region 154519	1436 bp downstream
Tssr154520	transcription start site region 154520	70 bp upstream
Tssr154521	transcription start site region 154521	164 bp upstream
Tssr157781	transcription start site region 157781	1794 bp upstream
Tssr157782	transcription start site region 157782	1642 bp upstream
Tssr157783	transcription start site region 157783	301 bp upstream
Tssr157784	transcription start site region 157784	1518 bp downstream
Tssr157785	transcription start site region 157785	1579 bp downstream