rs36246027 SNP Detail

Summary

• ID
  rs36246027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24146675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTCCTGT ATAGGGGAGA
  TACCGAACCT GCTTGTCCTC CCCAGCCCCA CCCCCACTCC ATCCTCCACC CTGCGTGTTT
  GGTGAGAGAA GGGTGATGGA AAGTCTGCCA CTCGGCATGC TTGCACAACC AGCTGCCAGA
  AAGAAAACGA GCCAGTGAGT CAAGCCTTTT AGACAGAGAG GCGCATGGTC ACGGTGCTCA
  Y
  GTCACGGTAC TCACGACTTG TCTACCAGGG GCGAAGGAAC AGCTCTTTTT TCAGTCCTGT
  TTCATTACAG CCTGTCACTT TGGCTTTCTC ACTTCCAGAC TCTCAAAGTT GGGAGGTGGC
  TTTGTGCTTG TCAAGCCTTC ACAGCTTCAC CAAGACTGAG GCAAGCCAAC ACGACCTTTT
  ATAACAACCC GAGCAATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50929013	NES13477488	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36246027					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50929013	NES13477488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24146675 () rs orientation: forward

Symbol	Name	Function Class
Gm69483	predicted gene, 69483	447 bp upstream
Rr371000	regulatory region 371000	62 bp upstream
Rr408576	regulatory region 408576	within coordinates
Rr408577	regulatory region 408577	484 bp proximal