rs36246349 SNP Detail

Summary

• ID
  rs36246349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129050775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAGATGT GTAGCTGCCA
  AGGCTGCTTA GCTATTTTGG CTTAGCCCTT GCTCAGTAGT AAAAGAAGTA GACAGCATTT
  GGGTTTGGCA AGGTCACTGT AAAGTCCTTA ATCTGCCACT AGAGGCTGCT CTGAAGTCTT
  AATATGAAGT CTAATGTAGA GAGAAGGAAT CCTCCCTCTC TTAGTTAGGA ACTGGAAAAG
  Y
  CTGGAAGTGG AACTAGTTTG CAATTCACGT GGTGGTATTT GATCCCCACA AAGAGCCTTT
  GTTTTTCCTG TCTTTCTTTT CCTTCCTTCC TTACCTCCTT TTGTTTTTTG TTTGTTTGTT
  TGATACAGGG TTTCTCTGTA TAGCCCTGCC TGTGCTGGAA CTCACACTGT AGACCAGGCT
  GGCCTCGAAC TCAGGGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51624497	NES14657299	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36246349					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51624497	NES14657299	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129050775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13813	CpG island 13813	429 bp distal
Gm65501	predicted gene, 65501	within coordinates
Rr584978	regulatory region 584978	within coordinates
Rr584979	regulatory region 584979	68 bp distal
Rr584980	regulatory region 584980	1540 bp proximal
Rr584981	regulatory region 584981	1600 bp proximal