rs36248378 SNP Detail

Summary

• ID
  rs36248378
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8998137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCACCTGT TCACCAGTTC
  GTGCACGCGT CAGCTGCAGG TGCAGGAGGA TCGGCAACAG CAAGGTGGGT CTAGAGAGCA
  AAGTCCTGCG CTCTGTGACT TTCTGACCTT TTGTATGTCT GGGGAAGGGT GGGCTGGTGA
  AGAGCTTGCA CCCTCTGAGA GGAAGAATAA TAGGCTGGAC AGTAGGTTCC CGTGGCCTCG
  M
  TGTTGATTTA AAGGATTATC ATTTCTTGAA AGACTTTTGA GAATACATAT TCCTTGGAAA
  CAGGTACTCA AACTAGACAC TGCCAGTTGT GTAGAGTGTG CTAGGGTGTG TATAATTGAA
  AACACCCATG GGGCAAGGCT GACTGGGCTA TTGAGGAAAT TTAGCCAAGA GCAGCTTTGT
  TAGCCTGGCG CTAACCTCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51571792	NES14613467	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36248378					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51571792	NES14613467	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8998137 () rs orientation: forward

Symbol	Name	Function Class
Ranbp3l	RAN binding protein 3-like	within coordinates
Rr499127	regulatory region 499127	641 bp distal
Tssr130603	transcription start site region 130603	717 bp downstream
Tssr130604	transcription start site region 130604	693 bp downstream
Tssr130605	transcription start site region 130605	671 bp downstream
Tssr130606	transcription start site region 130606	642 bp downstream
Tssr130607	transcription start site region 130607	360 bp downstream
Tssr130608	transcription start site region 130608	285 bp downstream
Tssr130609	transcription start site region 130609	261 bp downstream