rs36248472 SNP Detail

Summary

• ID
  rs36248472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:118353484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTAGCA AACTCAGCAT
  TGCTTTGAAC TTCAGAGACT GAAGTGGGGA ATAAATGCAT ATACATAATA TTGGTCTAAA
  GACATATGAG CTATATGTGT ACACTTGTGC ATAAAAGTTG TGCACATTAT TTTTCAATAT
  TTGAACATGT ATGTATCTTT GCTGGTACTT ATGATTATCT ATGATGGCTA TGTATCTCCA
  Y
  AAGGACATGG TTGACTTTAG AGAAATGGTA ATAATTTGGA GGTAAGTTTG GATCCTGGGA
  ACTAGAGGAG AATTTGCCCT TAGACTATAC TCCTGAATAT AGAAGTAGTT ACAATGAGCT
  ATTTTAATCA CAGATTTGTT GATTGATACT GTGACTCATT CTCCACAATG GAGAGAAACT
  ACAGTTTTTC CAAAGCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51603668	NES14666207	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36248472					SNP	C	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51603668	NES14666207	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118353484 () rs orientation: forward

Symbol	Name	Function Class
Rr583905	regulatory region 583905	1828 bp proximal