rs36248711 SNP Detail

Summary

• ID
  rs36248711
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136802785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCAACAT TACTATGAGC
  TACTACAACT GTTAACAGTG TCGGTGAATG GAACAAACAT GGCTTTGACC CACTAGGGAA
  CTTAGTGCTT CCAACCCTCT CAACCCAAAA TGCCAAGATG TGTTCTTTAC AGAAAAATAA
  CTGAACCACA AGGAAGAAAA GGGATTCTCA AATCACACAC TTAAAAACTC ATTTGTTAAA
  M
  ATTCTAACAT AAAAAAGACT TAATTTTCTC CTGCTAGCCA GTCAAGTATG AGGAGAAATG
  TGTTAAGCAG CTTACACTCT CAACATTCTA ACCATGAGTC CATTTTAAGA ATTCTACATG
  ACCTCACACA CCCCACTCTA CCAACGCTGA ACTTAGGCCA CCATGAAAGA GTCTGCCAGT
  TTTAACCCTT CTACTTCTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss51454453	NES13991580	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	C		A	A	C	A
ss321998849	CHEV_6_136774308	CHEVERUD	SCREENING_POP	f	SNP									C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs36248711					SNP	A	A	A	A	A	A	A	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51454453	NES13991580	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136802785 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	1839 bp upstream
Cpgi18110	CpG island 18110	1782 bp proximal
Rr380176	regulatory region 380176	1237 bp upstream
Rr640072	regulatory region 640072	1496 bp proximal
Tssr59337	transcription start site region 59337	1958 bp upstream
Tssr59338	transcription start site region 59338	1974 bp upstream
Tssr63834	transcription start site region 63834	234 bp downstream
Tssr63835	transcription start site region 63835	306 bp downstream
Tssr63836	transcription start site region 63836	1927 bp downstream
Tssr63837	transcription start site region 63837	1960 bp downstream
Tssr63838	transcription start site region 63838	1979 bp downstream
Wbp11	WW domain binding protein 11	within coordinates