rs36248870 SNP Detail

Summary

• ID
  rs36248870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60236368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGTGGC CCTGGGGCCT
  GTAGCCTCAC AGCTTCTCTG GGTTCTGAGC TGGTGGGATG CAGGCCTTAG CTGGAATTAC
  CCTAGCCTTA CTGGGGCCAA GTATAGAGAG CCAAGGGGGC AGCTACTTTC TGTCCATCGG
  GGATGGCAGT GGGTATACGC CATCCGTGCT CCAACTCAGA TGCCGGGAAA GGGCTGATCT
  R
  TGGATGCTGC CCACTCAGTT GGAGTGCTTT CCAGGCCCAA GGCCTGGAGG GTGGAGGCCC
  TTAGCAGTTA GACAAGCATC AGAATTTCCA GCCTGGAGCA GCTGCAAGGG CTGGGAGGGG
  TTGGGACATG GGCTGGGTGG CAGGTGGGTG GAGAGCACTG GATGCCCTCA GTCAGCTGTG
  CCCAGGAGCC AGGACTTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50866202	NES14170281	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36248870					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866202	NES14170281	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60236368 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	within coordinates
Rr223077	regulatory region 223077	1738 bp distal
Rr228097	regulatory region 228097	within coordinates
Tssr93633	transcription start site region 93633	817 bp downstream
Tssr93634	transcription start site region 93634	784 bp downstream
Tssr93635	transcription start site region 93635	713 bp downstream
Tssr93636	transcription start site region 93636	164 bp upstream