rs36249048 SNP Detail

Summary

• ID
  rs36249048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:188755390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGGAAA ATCAGACCAA
  GCCCCCCTGA GAGGAAAAGT GAGAGCATGG AACCAGGCGG CAGATGGAGA GACCACACCC
  AACCGTAAGA CAATGCCAGA GTCTGATCGA CTGTTCATGC AGGCTGCTCA GTCTTCATGG
  GCCTGTGACA TCATCAAACT ATCCAGGTGC ACACAAGTAC ACATGCAAGG AAGAGAGCCA
  Y
  GCCCAGAGTA TTAGTGTCCT CTGAGATTAA GACATACCAA ATACTTAACA GATATACATC
  TTGCTTTTAC CTGGAGAAAC TGCTTCTTTG GGAAGCAGGC CATACCTGAG AATAAATTTT
  TGGAAGCCTG AAAACTGAGC GCAAAAAGAA AGTATAACTT TTAGTGAATA GGACACTATT
  TACTTAGTGA ATATAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51419690	NES14448856	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36249048					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51419690	NES14448856	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188755390 () rs orientation: forward

Symbol	Name	Function Class
Rr372621	regulatory region 372621	1796 bp upstream
Rr425741	regulatory region 425741	135 bp proximal
Rr425742	regulatory region 425742	245 bp proximal