rs36249223 SNP Detail

Summary

• ID
  rs36249223
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113365035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCG CTAGTGCACG TGGTAGACTG
  M
  TGCCGCCGCG GGGAAACCTT GCAGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50460415	NES14119726	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	C	A	C	A	A		C	A	A	C		A
ss145682769	ENSMUSSNP4497773	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						C
ss322424331	CHEV_7_120909312	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36249223					SNP	A	A	A	A	A	A	C	A	C	A	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460415	NES14119726	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113365035 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	within coordinates
Rr653859	regulatory region 653859	within coordinates
Rr653860	regulatory region 653860	1891 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	200 bp upstream
Tssr68625	transcription start site region 68625	3 bp downstream
Tssr68626	transcription start site region 68626	39 bp upstream
Tssr68627	transcription start site region 68627	108 bp upstream
Tssr68628	transcription start site region 68628	227 bp upstream
Tssr68629	transcription start site region 68629	246 bp upstream
Tssr68630	transcription start site region 68630	285 bp upstream
Tssr68631	transcription start site region 68631	321 bp upstream
Tssr68632	transcription start site region 68632	443 bp upstream