rs36249713 SNP Detail

Summary

• ID
  rs36249713
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127765553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG AGCCACTGGA TTCAATCAGG
  W
  CAAAGGTTAT ATAGAACTCG GTATC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51864550	NES14885913	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A	A	A	T	A		A	T	A	A		A
ss133633231	ENSMUSSNP2380330	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
ss321942292	CHEV_6_127738608	CHEVERUD	SCREENING_POP	f	SNP												A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36249713					SNP	T	T	A	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51864550	NES14885913	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127765553 () rs orientation: forward

Symbol	Name	Function Class
Gm40402	predicted gene, 40402	within coordinates
Gm66979	predicted gene, 66979	1762 bp upstream
Mir7233	microRNA 7233	447 bp upstream
Rr151534	regulatory region 151534	1048 bp proximal
Tssr59045	transcription start site region 59045	1760 bp upstream