rs36249814 SNP Detail

Summary

• ID
  rs36249814
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:49288833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATGAGGG AACACCTACT
  GTGCCATGTC AGTGAATTAT GACCATCGGG GTTCAGACCC CAGCTTGACT GCAGACCAGC
  CTGCAATTCC CCACAAAAAC TAAACATTTT CATGTTAAAA ATAGAACAAA TGGTTTTCAG
  AGGAAAAGAA TGTTCAGCAA TTTGTCTCGT GTAGGGGACC TACAACCATT TGTGACTACG
  K
  GTCCATGGGA TTGGATGTTC TTTCCTAGAT CCACAGTGCC ATTCATGTTT GTAGTGCAAA
  ACACACATAT CCATAAAATA ACAAAAAAAT TAAAAGGTAG ATAATCCACT AACATGGAAG
  TTTAGCAACT CCTTGTATGT TTTATTGTAT GGCATAGTTT GCCAATGGCC ACACATAAAT
  TGGTTCTCAG CAGCACCAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51106822	NES13870961	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36249814					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51106822	NES13870961	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:49288833 () rs orientation: forward

Symbol	Name	Function Class
Kcnip4	Kv channel interacting protein 4	within coordinates
Tssr50936	transcription start site region 50936	419 bp upstream
Tssr50937	transcription start site region 50937	535 bp downstream