rs36249824 SNP Detail

Summary

• ID
  rs36249824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113418882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTATTAA TTATTTAATT
  AATTTATTGG CAAACGTTCA ACACAGGCCA GGCTGGCCTC AATGAACTCC TCCTGTTCCT
  GCCTCCACCT TTCACGTTGA GGAGATTACA AATATTCACA GCCATCTTTG TTCCAGTTAG
  CCCTCAGGAC GCAGGGTCTC AGACTATGGA GAGCATTGCA GGGAGGAAGA GATGCCTCTT
  Y
  ACTGCTTCAG CCTCTGAGTG ACGCCTCTCA GCATTGACCA CCCTATACTT TTCGTTGTAT
  AACGTCTTTG CTCTGGACCC TAACCCCAAG GTTGTGTGGA GCTTCAGGAA ATATAGATGT
  GCAACAAGCC ACTGGGCAAA GATGCCAAGT CTAGTTAGGT ATGGTTTAAG ACTATAATCA
  CGCCTTGGGA GATTGAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51841493	NES14768192	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36249824					SNP	T	T	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841493	NES14768192	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113418882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17844	CpG island 17844	461 bp proximal
Gm43928	predicted gene, 43928	1027 bp upstream
Jagn1	jagunal homolog 1	648 bp upstream
Rr132170	regulatory region 132170	282 bp distal
Rr145547	regulatory region 145547	118 bp proximal
Rr146999	regulatory region 146999	1883 bp distal
Rr399832	regulatory region 399832	423 bp upstream
Tssr58212	transcription start site region 58212	650 bp upstream
Tssr58213	transcription start site region 58213	707 bp upstream