rs36251285 SNP Detail

Summary

• ID
  rs36251285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162398915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC CGTGCCCAGC CAGATTCGAG
  Y
  TTTTTTAGCG AAATGAAATA GAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
ss51397886	NES14465433	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
rs36251285					SNP	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51397886	NES14465433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162398915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	within coordinates
Rr396472	regulatory region 396472	641 bp downstream
Rr396473	regulatory region 396473	within coordinates
Rr421988	regulatory region 421988	110 bp distal
Rr421989	regulatory region 421989	799 bp distal
Rr421990	regulatory region 421990	731 bp distal
Rr421991	regulatory region 421991	within coordinates
Tssr9715	transcription start site region 9715	690 bp downstream
Tssr9716	transcription start site region 9716	674 bp downstream
Tssr9717	transcription start site region 9717	591 bp downstream
Tssr9718	transcription start site region 9718	282 bp upstream
Tssr14622	transcription start site region 14622	1024 bp upstream
Tssr14623	transcription start site region 14623	3 bp downstream
Tssr14624	transcription start site region 14624	22 bp downstream
Tssr14625	transcription start site region 14625	49 bp downstream
Tssr14626	transcription start site region 14626	87 bp downstream
Tssr14627	transcription start site region 14627	127 bp downstream
Tssr14628	transcription start site region 14628	148 bp downstream
Tssr14629	transcription start site region 14629	193 bp downstream
Vamp4	vesicle-associated membrane protein 4	within coordinates