rs36252290 SNP Detail

Summary

• ID
  rs36252290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127500272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGGCAA GTGAACTGAG
  CCCCAGGAGT GAAGGGCAGC CTTGAGGACC CGGGGTCCTC ACCTCATGCA AGCTAAGCTG
  TTTGCCCTCC CGCCTTTTGG AGTCCAGGCG GCCGTAGATG ACGCTGTACT TCCGGATCTC
  CTCTTCCTTC TGGGCGTCAT GATCGTCCAT CTCAAAGATG TGCCCCACGC TCCGCGCCAG
  Y
  TTCTTATTCA GCTTCAACAG GGATGCGATC TCTCCAGTGT CACCCCTGGG GAAACTCCGG
  AAGATCCTCT CCACACTCTC CACCACCATT CGCACCATCT CTGGTTCCAG GCGGTCTGGA
  CCACCCCCTG CACCACCAGC TGCCACCCCC CCAACCCCAG GCCCTTCAGA GACTCCTCCC
  CCTGCAGGTG GGGAGAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50947347	NES14151039	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36252290					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947347	NES14151039	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127500272 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2370	CpG island 2370	1503 bp distal
Cpgi2371	CpG island 2371	1664 bp proximal
Gm16229	predicted gene 16229	within coordinates
Nab2	Ngfi-A binding protein 2	within coordinates
Tssr99812	transcription start site region 99812	922 bp upstream