rs36252540 SNP Detail

Summary

• ID
  rs36252540
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66484593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGAAAC ACATGGGATA
  AAATCCTACA AACATCCCTC TATCTGTGGT CTTCAAGACA AGAAAGAGGG AAGGAGCTTA
  TCTGAAGGAA AAGGAACAAA ATTCAGGGAC TGCACAGAGA AAAGAAGGCA AGATAAAATT
  AAAGCAGAAG CTAAAAGGGA AAAAAAAATA TCTCTGGACT GAAAAGCAAC TGTCTGTCAC
  W
  CTGATATATG TGGAACTAAA GATTCAAAGT GAGATTTTTC CATCTTGGGG CTCTGATGAG
  CCCTAAGGCA ACACTTAGGG TGCCCCACCT CTGTATAAAT AGTGTACCGT CCCTTCTGCC
  AGAGTGTCCT CTGACCACTT ATCTGTCTGA CTAAGCCGCT CTTCAAGTAT CACCTCTTCT
  ATGAAATCAT CTCTGAATCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50968220	NES13941258	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36252540					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968220	NES13941258	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66484593 () rs orientation: forward

Symbol	Name	Function Class
Rr665	regulatory region 665	within coordinates
Rr811	regulatory region 811	1200 bp distal
Rr577850	regulatory region 577850	191 bp distal