rs36254138 SNP Detail

Summary

• ID
  rs36254138
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:75830018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGAGCT TGGTGAACAT
  AGCTGTATAA CCTAGAATCC ATGTGATGCA AACAGAGAAG CAATTTCTGC AAATTATCTT
  CTGACTTCCA CATGTGCCCT GATGTCTGTA TGAACACACA CAAAAGCACA TATGCACACA
  CACACACACA CACACACACA CACACACACA CTCATACTAA ATAAGTTTCA GAGTAAAAAA
  M
  ATCCTTGTTA ATTGACTAGA CTAATACACA CTAAAGAATG CCAACTCCAA AGCAGAACCC
  ATGAGCATTA TAGCCTTCCT GTCAATTTTT ACCTCTAAAA TTTACATATT AAGAATATAG
  ATGGCTACAC ATCAGAACAG ATTCTATGAG TTCAATTTAA ATCAGCTCTA AATTTGATAC
  AGCTAATTTA CACTAACACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51553940	NES14683539	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36254138					SNP	C	C	C	C	C	A	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51553940	NES14683539	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75830018 () rs orientation: forward

Symbol	Name	Function Class
Golim4	golgi integral membrane protein 4	within coordinates
Rr72842	regulatory region 72842	218 bp distal
Rr81458	regulatory region 81458	1984 bp proximal