rs36254170 SNP Detail

Summary

• ID
  rs36254170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46666049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAACAGA ACATATATAA
  AATGTAAAGA ATCCCCGGTA GGACAAACAG AACTGAAACC TAAGTTTGAG GAGAAAGATG
  AAGTTTTGTG GTCACAAATG GAAGTTTGTG ACGGCTGGAG AGGAGCTTGT TCATGTGTTG
  TTCATTAATA GTGGTTCCGT CAGCTGTGTT ACTATGAGAA CACTTTTCAC TGTGGCTGGA
  Y
  CTTGTGCTGA TTAACTCCTT GAACCGCTGA TTTAAGGGAG ATGTGTAACA ACTGACAGTC
  TTGGTGCTTC TTACGCCTCT CAAAGAGAGG TTATCATAGT CACCCACCCA CCCTTCCTTC
  CTTCCTTCCT TCCTTCCTTC CTTCTTTTCT TCCTTCCTTC CTTCCTTCTT TTCTTCCTTC
  CTTCCTTCCT TCCTTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51103813	NES14353319	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36254170					SNP	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51103813	NES14353319	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46666049 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	within coordinates
Rr272096	regulatory region 272096	249 bp distal
Rr276207	regulatory region 276207	1352 bp proximal
Rr283800	regulatory region 283800	1796 bp proximal