rs36256053 SNP Detail

Summary

• ID
  rs36256053
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:148138666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTAACAC TTCTGTGAGG
  AGTGCAGCCC ACAGCTCCAC ACCTGAGCAA CACATTTCAG GGTCCCAACC TCAGTGTTAA
  TGCACTCAGA AGGCTCAGAG TGGAGACACA ACACTAGTGA AACCTGGAAT ACAGTTCAAA
  CATTTAAAAC ACTTCCATAA AGAATCAAGG GTGCTGAGCT TCGACTTTCC TGTAGAGATA
  M
  ATATAGTCAC ATACAATTCT AGAAGATTCC ATCTTGGTGT TTTAGGCACT AGAAAAAAAC
  ATATACCAGA GTAGCATTTA ATGTACTTCT CCAAAAGTGC TTAGTGATAA TCTGGGCGAT
  GCTAGCCCAA GCCCAGCTAT CAAGTGCTCT GCTCCCCTGC CTCCACAGGG CTCTACCAAT
  GCTCTTCACC ACCGACTCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51877276	NES14897926	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36256053					SNP	C	C	C	C	C	C	C	C	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51877276	NES14897926	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:148138666 () rs orientation: forward

Symbol	Name	Function Class
Gm67517	predicted gene, 67517	1119 bp downstream
Tmtc1	transmembrane and tetratricopeptide repeat containing 1	within coordinates