rs36257146 SNP Detail

Summary

• ID
  rs36257146
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105291668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGTGCTCA ATGGCTTCTG GACACTGAGC ATAGAAAGAG
  CCACTTGCTC TTTGCCCCAA TGTCACAGGC AGGGCTGAGC AGCTAGGCCA GGTCTGTGGT
  R
  CTGATCTAGG ACAGCATCTT CAGGGCAGCA GGCAGGAACT TGTAACAACT AAGCTCCCCA
  CTTCCTCTTC ACTGCTTCCC GTAATTCCAT CCCATCCCTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51920947	NES14946576	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36257146					SNP	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51920947	NES14946576	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105291668 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19541	CpG island 19541	1240 bp distal
Gm22504	predicted gene, 22504	within coordinates
Gm45799	predicted gene 45799	within coordinates
Rr400513	regulatory region 400513	1913 bp downstream
Rr652795	regulatory region 652795	1861 bp distal
Rr652796	regulatory region 652796	1940 bp proximal
Timm10b	translocase of inner mitochondrial membrane 10B	within coordinates
Tssr68382	transcription start site region 68382	1947 bp downstream
Tssr68383	transcription start site region 68383	1875 bp downstream
Tssr68384	transcription start site region 68384	1652 bp downstream
Tssr68385	transcription start site region 68385	1434 bp downstream
Tssr68386	transcription start site region 68386	1391 bp downstream
Tssr68387	transcription start site region 68387	119 bp downstream
Tssr68388	transcription start site region 68388	154 bp upstream