rs36258110 SNP Detail

Summary

• ID
  rs36258110
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64977504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGGTTTA GAGAAGATTC
  TCAGACTTGC GGGTGAGCCA AGGAAGGGCT ATATTTCGTT GCCCTTTTGT GAGGCAGTTG
  AACTGGAAAG AGTTAATTAT GGACCTGGGG CTGGGTGCCT GTCCCAGAGT ACGCCCTACA
  CCTAGCCTGG GTCTTTGATG GAGACTTGAA GGCAGTCTAG AGGAGAGGGG CATCCATTTG
  Y
  ACTAAGTGTA TATAGAAGAT GCACAGTGTA GGTTAAACAG TGTAGGAGAA CCCTGAGGAT
  ATTACCAAAT TGGCACGTGT CTGAATTCCC ACGTCTCTGA GGTCCGTGCC ACGGAGAGAA
  AAACCCAGCG GCGGCAGCAG TGGCAGGGTG TCCTCACTCT GCTTGCTGTT CAGCTGCCAG
  GATCTGTGGG CCTTAAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51142156	NES13844331	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36258110					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51142156	NES13844331	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64977504 () rs orientation: forward

Symbol	Name	Function Class
Gm31684	predicted gene, 31684	411 bp downstream
Klf3	Kruppel-like transcription factor 3 (basic)	within coordinates
Rr612115	regulatory region 612115	285 bp distal
Tssr46420	transcription start site region 46420	794 bp upstream
Tssr46421	transcription start site region 46421	1754 bp upstream
Tssr46422	transcription start site region 46422	1917 bp upstream
Tssr46423	transcription start site region 46423	1956 bp upstream