rs36260419 SNP Detail

Summary

• ID
  rs36260419
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29231025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCCAAC TCAGAGATTT
  CCCCTGCCTC TGCCTTCCAA ATGCTGGGAT TAAAACCACC ACCCACCGGG CTTCATTTGT
  TTCTTTTAGT GTCTTTTCCT TTGTAATTTG AAGGTGTCTT GAGTAAGGTG TCTTGAGTGT
  GAAAAGTAAA CATATTTTTT TTTCTCTACT TTACCCAGAT AGGCTATTCT TGAAAGATGG
  R
  ATCCCTTTCT GGCAAAATAG AGAAGACCAT TGGCTTTGGA GTTAGATCTG AGCGTGCAGT
  CTTAAGTTAG GATAATGGTG TTCTTCCCAT TTAACAGCAG TGTTAACTTA AAATTTACTT
  TCTCAGAACC TTGTGTGGGG GTCGATTGGA TGCATGCAGA GCAGTAAATG GTTTGGTCGC
  TTCTGAACGT CTTAGCTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50753213	NES13566095	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36260419					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50753213	NES13566095	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29231025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	1170 bp distal
Gm41829	predicted gene, 41829	1300 bp upstream
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	221 bp upstream
Rr546088	regulatory region 546088	1787 bp distal
Rr546090	regulatory region 546090	1174 bp distal
Rr546091	regulatory region 546091	within coordinates
Rr546092	regulatory region 546092	345 bp proximal
Rr546093	regulatory region 546093	1115 bp proximal
Tssr155780	transcription start site region 155780	1960 bp downstream
Tssr155781	transcription start site region 155781	1771 bp downstream
Tssr155782	transcription start site region 155782	1758 bp downstream
Tssr155783	transcription start site region 155783	1724 bp downstream
Tssr155784	transcription start site region 155784	1312 bp downstream
Tssr155785	transcription start site region 155785	1183 bp downstream
Tssr155786	transcription start site region 155786	1140 bp downstream
Tssr155787	transcription start site region 155787	1035 bp downstream
Tssr158749	transcription start site region 158749	1520 bp upstream