rs36260931 SNP Detail

Summary

• ID
  rs36260931
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81874200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAAGTGC TGATTGACAG
  GCTGGATCAC TAAGATAGCT GAGGTTTGCT TTTGAGTGCC TGGTTTTGAA AAGGTAGGTC
  TCTCTCTCTC TCTCCAGCAT GGAGATTAGG TAGACAAGGG CTTTCAGGGT GTGCCTCTTC
  TCACCCCAGG CACCCCCAGA ACCCTGCATG CAGAGGCCAC GTCCCCTCAG GGCATCATGT
  S
  GATGTCTGCA CATTTCTGTA CATCTTACTC ACTCTGGAGT TCCTTTGGAC TCCTTGTGGA
  GAAAACGAGG AAGCACACCA AATATCAGAC ATCTGTTAGC ACTGGGACAA GAAAGAACAT
  CCTCGGTGTG GGGCTTCCCT GTCTCTGGGG CTGACCTAAA GTCTCCAGGG CATCACAGAG
  CTGCTGAGAC AAAAGCCTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51348635	NES13742438	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	G	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36260931					SNP	C	C	C	C	C	C	G	C	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51348635	NES13742438	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81874200 () rs orientation: forward

Symbol	Name	Function Class
1700097M23Rik	RIKEN cDNA 1700097M23 gene	1880 bp upstream
Mir468	microRNA 468	543 bp upstream
Mir7232	microRNA 7232	1556 bp upstream