rs36261381 SNP Detail

Summary

• ID
  rs36261381
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:34273124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCCAATCA TGCTTAGAAT CTCTCTGTCA TCAGAAAGGT
  CTCTGTCAGA CAGCAGGGCA AAAGCCTAGT GGGCTGCTGG CCTCCATGTA TTTGGGCATC
  W
  GCTGCTGCTG CAGAGGGTCT TAGGAATGCG CAGTGCATCG GCCATATTAT GACCACAGAT
  GCAGGGCTGG GAGGAGCCTG CAGAAGGAAG TGGGTACAGC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51083375	NES14363094	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36261381					SNP	A	T	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51083375	NES14363094	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:34273124 () rs orientation: forward

Symbol	Name	Function Class
4930447K03Rik	RIKEN cDNA 4930447K03 gene	within coordinates
Gm47065	predicted gene, 47065	114 bp upstream
Gm61046	predicted gene, 61046	1559 bp upstream
Rr281206	regulatory region 281206	within coordinates
Tssr119219	transcription start site region 119219	1561 bp upstream