rs36262855 SNP Detail

Summary

• ID
  rs36262855
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113284555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGGGAAG CCGGGGGAGC
  CGGGCCAGAG AGTGCGGGGC AGGAGCCGGG GCGGCCAGCT TCGCTTCCGA GAGTTCGGGT
  TTCCCCTTCT CGGCCCGTCT CTCATCGCCG GCCTCCCACA CGGGGTTGGA GCCCCGGCGG
  GCGCCCCCGG CGATGAGCCC AGACTGGAGG TGGCCGGTGA GTACGGGCCG GGGCCGGGAG
  R
  TAGTGCCAGT GGAGAAGGGG CAGCCCTGGC GAGGCGCCTT AGGCTCCTCC TGAGCCCCTG
  GAGCAGGGAG AATTGACATG CCATTCGTTC GTGGGGAGCG TCCGCGGCAG CAGTGTTCCC
  TTTGAGGCTG CCTGGGCCAG AGGCAGAAGG GAAACCTTGT TTGACTTGTT ACACTTTGAC
  AAAAGGGAAG CGGCGCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51842520	NES14762345	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36262855					SNP	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842520	NES14762345	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113284555 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	Intron
Cpgi17838	CpG island 17838	within coordinates
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	920 bp upstream
Gm67816	predicted gene, 67816	within coordinates
Rr399829	regulatory region 399829	921 bp downstream
Rr636483	regulatory region 636483	1948 bp distal
Rr636484	regulatory region 636484	155 bp distal
Rr636485	regulatory region 636485	within coordinates
Rr636486	regulatory region 636486	301 bp proximal
Rr636487	regulatory region 636487	731 bp proximal
Tssr58189	transcription start site region 58189	617 bp downstream
Tssr58190	transcription start site region 58190	364 bp downstream
Tssr58191	transcription start site region 58191	348 bp downstream
Tssr58192	transcription start site region 58192	247 bp upstream
Tssr58193	transcription start site region 58193	273 bp upstream
Tssr62434	transcription start site region 62434	173 bp downstream