rs36263016 SNP Detail

Summary

• ID
  rs36263016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37464408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC TATTTCCCCT CTCTGCAGAG
  R
  TGCCCTCCTC ACTCTAGTTA CAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50673629	NES14003073	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A		A	A		A
ss322907352	CHEV_9_37360697	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36263016					SNP	A	A	A	A	A	A	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50673629	NES14003073	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37464408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21585	CpG island 21585	223 bp distal
Nrgn	neurogranin	367 bp upstream
Rr676716	regulatory region 676716	219 bp distal
Rr676717	regulatory region 676717	within coordinates
Rr676718	regulatory region 676718	1076 bp proximal
Tssr88858	transcription start site region 88858	401 bp upstream
Tssr88859	transcription start site region 88859	371 bp upstream
Tssr88860	transcription start site region 88860	130 bp upstream
Tssr88861	transcription start site region 88861	279 bp downstream