rs36264215 SNP Detail

Summary

• ID
  rs36264215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:63796077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATCAGCT GAGCCATCTC
  ACCAGCTCAA AATTTATTTT TAAATAAGTA CAAGCTGGAT GCTGGCAAAT TTTCCTTTTG
  CCTCAGACGC TAAGACAATA CTTTATTTCT CAGATGGGCC TCTTGCTGAC CCTGGACCTG
  CTGGCCCAGA TATCTTCCTT TCTCTGTCTC CTTGGCACTG GGATAAGAGA CACATGTCAC
  Y
  GTTTTGTTAA CAAGACGGCA AAGGCACTTG CCCCTGAACG TGATGACCTG AGTTTGATCC
  CTGGGACCCA CAAGGTGGAA GGAGAGAACC GACTCCCTCC AGTTGCCCTC TGACCTCTAC
  ATGAGCACTG TGGCTCATAC TAAATAAATA AATGTAACTT CATGGTAACT GGGTGTTTTG
  TTTTGAGACA TAGTCTACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50722627	NES14252370	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36264215					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50722627	NES14252370	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:63796077 () rs orientation: forward

Symbol	Name	Function Class
Rr49	regulatory region 49	within coordinates
Rr959	regulatory region 959	within coordinates
Rr973	regulatory region 973	1923 bp proximal
Rr196462	regulatory region 196462	324 bp proximal
Rr196463	regulatory region 196463	1924 bp proximal
Rr201237	regulatory region 201237	124 bp proximal
Rr201238	regulatory region 201238	1724 bp proximal