rs36264517 SNP Detail

Summary

• ID
  rs36264517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49025677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATGTGGT CTGTCATTTT
  GGATGTTATG TAAATGGGTT CACATCATGT GCTGTGTTCT TTGCCCCTCT TTGCTAAATA
  ACCACAGAAA GCTTTCAGTT ACTGTGCATG GAAATCTCTC ACACCTGACC GGGTGTCGCA
  CAGTGTCACA GGGTGTACTG ATAAACACCC ACAAGCTTGT TGGTGAGCAA CGAAGGGATC
  R
  CAAGTCCAGT TACAAATGTA GCAGTACTGG GCTAGTCCAG ACATACAGCT TCATCTCACT
  CTAAACCCCC TCCCTCCCCG CTCTCCTCCC TCCTCCTACA TTTCCCTTTC CCCAGCCTCT
  TATGTAGCCC AGGCTAGCTT CAAACTCACT ATTATCGTCT GGTGATCCTC TAGCCTTCAC
  CTTCTAATGG CTGGGATTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658446	NES14824144	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36264517					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658446	NES14824144	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49025677 () rs orientation: forward

Symbol	Name	Function Class
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56342	transcription start site region 56342	1990 bp downstream
Tssr56343	transcription start site region 56343	1444 bp downstream
Tssr56344	transcription start site region 56344	1420 bp downstream
Tssr56345	transcription start site region 56345	1401 bp downstream
Tssr56346	transcription start site region 56346	1348 bp downstream
Tssr56347	transcription start site region 56347	1330 bp downstream
Tssr56348	transcription start site region 56348	1307 bp downstream
Tssr56349	transcription start site region 56349	986 bp downstream
Tssr56350	transcription start site region 56350	957 bp downstream
Tssr56351	transcription start site region 56351	930 bp downstream
Tssr56352	transcription start site region 56352	911 bp downstream
Tssr56353	transcription start site region 56353	843 bp downstream
Tssr56354	transcription start site region 56354	829 bp downstream
Tssr56355	transcription start site region 56355	805 bp downstream
Tssr56356	transcription start site region 56356	787 bp downstream
Tssr56357	transcription start site region 56357	775 bp downstream
Tssr56358	transcription start site region 56358	757 bp downstream
Tssr56359	transcription start site region 56359	726 bp downstream
Tssr56360	transcription start site region 56360	679 bp downstream
Tssr56361	transcription start site region 56361	1139 bp upstream
Tssr56362	transcription start site region 56362	1367 bp upstream
Tssr56363	transcription start site region 56363	1654 bp upstream
Tssr60849	transcription start site region 60849	1381 bp upstream
Tssr60850	transcription start site region 60850	1328 bp upstream
Tssr60851	transcription start site region 60851	866 bp upstream
Tssr60852	transcription start site region 60852	837 bp upstream
Tssr60853	transcription start site region 60853	825 bp upstream
Tssr60854	transcription start site region 60854	808 bp upstream
Tssr60855	transcription start site region 60855	763 bp upstream
Tssr60856	transcription start site region 60856	736 bp upstream
Tssr60857	transcription start site region 60857	635 bp upstream
Tssr60858	transcription start site region 60858	1696 bp downstream
Tssr60859	transcription start site region 60859	1738 bp downstream
Tssr60860	transcription start site region 60860	1752 bp downstream
Tssr60861	transcription start site region 60861	1770 bp downstream