rs36264586 SNP Detail

Summary

• ID
  rs36264586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110975744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGAAGGC CAGGCCACCA
  GAAAGCAGCT GTGGTTGTTA GGCAGAGGGA AACCCATTGC TGGCCCCGGC CTACTTTCTG
  TTTCATACTC TCCTCTCCGG CCACCTGCCC ACACTATGAT GGCAGAGCTC TGCGGTTAAA
  ATAGAGCTCC TGTAGCCTGT TAAGCCAGAC CAAAGTTCAT CCTGGGAACC AATGAGTTTA
  Y
  TCGTCACTTA CAGATGGATG GTGACCCTAA AGCAGTACAC ATAGGAAGAT CAGCACCCAG
  CATGGACAAT GACTCCCTCA TGGCCGTGTG CTGTAAATAT TATCTTGGGG GATTTTACTC
  TACTTAGACC ATACGGTTCC CAAATAAAAG ACACAAATCT TTTAAGGCAT TAGAGCTGGA
  CAGGTATCAA GCCTCTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51791150	NES14722650	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	C	C	C	C	T	C
ss149056725	ENSMUSSNP2823398	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36264586					SNP	T	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51791150	NES14722650	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110975744 () rs orientation: forward

Symbol	Name	Function Class
Hscb	HscB iron-sulfur cluster co-chaperone	1201 bp downstream
Rr616963	regulatory region 616963	361 bp distal
Rr616964	regulatory region 616964	within coordinates