rs36264767 SNP Detail

Summary

• ID
  rs36264767
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:63283064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGTGGGG CCTTATGAGG
  AAAGGAGACT AGCACTGTGC ATATTGTGAA GAGCACCAGC TGCAGAGAAG GGATGCCATT
  CGGGGTCAAA GACTGGAGGC TGCTAGCTCA CCTAAGGTGC CACATGCTTG GCTTAGACCC
  AAGCATGGCC TTGGTGGTAC GAGCATCTAG CTTTCAAAAT GAAATTATAG ATACCACCAT
  Y
  TCATTTTTTA TCAACCCAAG GCAGTAAATG ACACCACTCA GTGTTCTCTT ATAGTCCCTG
  TAAGTCAGAC GGCACATCTG CCTGTTAAAA CATTCTTCCC CGTACACCAA ATTCTCCTGC
  TGAGTTACTG TGGACATACA TATATGTCAC CCTGTTAATG TCAACTGACT AGAAAGATGC
  ACGTGGACTG AAGTATATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss52026093	NES15043515	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs36264767					SNP	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52026093	NES15043515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:63283064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21914	CpG island 21914	1485 bp proximal
Map2k5	mitogen-activated protein kinase kinase 5	within coordinates
Rr401444	regulatory region 401444	1962 bp upstream
Tssr90089	transcription start site region 90089	1842 bp downstream