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rs36265978 SNP Detail
Summary
  • ID
    rs36265978
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:131456084 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGACGCCGAG AGCCGTGGTG
    CAAGGGAGAA AGCCCACGGG CGAGCTCCGA GAAGAGGGAG CGGGACGGGG CCAGAGCCCG
    CGTGGAAAGG GCTGAGGGGC GTTGAATCCT ACGAAGAAGC CGCGTGGAGC TGAGCAAGAA
    TTGGAGCGCT CTGCGGGCGG AGCTCGCGCT GGGAGTGGTC AGAGAGGCGA GGCTTTAAAG
    R
    GAAGAAGCCC GCTGGGAACT GGGAAATCGC CCAATTCCGG AGCCGGGGTC GGAGCTGAAG
    AGTAGAAGAT TCTTGAAGAC CAGAGAAAGT TAAACCTGTT GCGGAAGTTT CCCTTCAACT
    CCACTTGTCT CTCCCCACCT TGAACTCCAT TTCCCTTCCC TCCCCAAGTC AAAAGGAAGT
    AAAATTTGCT CTTCCTACTC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51368036 NES14475977 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G A G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36265978 SNP G G G G G G G G G G A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51368036 NES14475977 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:131456084 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi711 CpG island 711 within coordinates
Fam72a family with sequence similarity 72, member A mRNA-UTR
Gm70877 predicted gene, 70877 658 bp downstream
Rr396286 regulatory region 396286 763 bp downstream
Rr396287 regulatory region 396287 453 bp downstream
Rr418129 regulatory region 418129 1712 bp distal
Rr418131 regulatory region 418131 1010 bp distal
Rr418132 regulatory region 418132 433 bp distal
Rr418133 regulatory region 418133 191 bp distal
Srgap2 SLIT-ROBO Rho GTPase activating protein 2 994 bp upstream
Tssr8629 transcription start site region 8629 475 bp downstream
Tssr8630 transcription start site region 8630 435 bp downstream
Tssr8631 transcription start site region 8631 344 bp downstream
Tssr8632 transcription start site region 8632 15 bp upstream
Tssr13598 transcription start site region 13598 1798 bp upstream
Tssr13599 transcription start site region 13599 1756 bp upstream
Tssr13600 transcription start site region 13600 1601 bp upstream
Tssr13601 transcription start site region 13601 1053 bp upstream
Tssr13602 transcription start site region 13602 961 bp upstream
Tssr13603 transcription start site region 13603 806 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory