GGACGCCGAG AGCCGTGGTG CAAGGGAGAA AGCCCACGGG CGAGCTCCGA GAAGAGGGAG CGGGACGGGG CCAGAGCCCG CGTGGAAAGG GCTGAGGGGC GTTGAATCCT ACGAAGAAGC CGCGTGGAGC TGAGCAAGAA TTGGAGCGCT CTGCGGGCGG AGCTCGCGCT GGGAGTGGTC AGAGAGGCGA GGCTTTAAAG R GAAGAAGCCC GCTGGGAACT GGGAAATCGC CCAATTCCGG AGCCGGGGTC GGAGCTGAAG AGTAGAAGAT TCTTGAAGAC CAGAGAAAGT TAAACCTGTT GCGGAAGTTT CCCTTCAACT CCACTTGTCT CTCCCCACCT TGAACTCCAT TTCCCTTCCC TCCCCAAGTC AAAAGGAAGT AAAATTTGCT CTTCCTACTC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51368036 | NES14475977 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | A | G |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs36265978 | SNP | G | G | G | G | G | G | G | G | G | G | A | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51368036 | NES14475977 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr1:131456084 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi711 | CpG island 711 | within coordinates | ||||||
Fam72a | family with sequence similarity 72, member A | mRNA-UTR | ||||||
Gm70877 | predicted gene, 70877 | 658 bp downstream | ||||||
Rr396286 | regulatory region 396286 | 763 bp downstream | ||||||
Rr396287 | regulatory region 396287 | 453 bp downstream | ||||||
Rr418129 | regulatory region 418129 | 1712 bp distal | ||||||
Rr418131 | regulatory region 418131 | 1010 bp distal | ||||||
Rr418132 | regulatory region 418132 | 433 bp distal | ||||||
Rr418133 | regulatory region 418133 | 191 bp distal | ||||||
Srgap2 | SLIT-ROBO Rho GTPase activating protein 2 | 994 bp upstream | ||||||
Tssr8629 | transcription start site region 8629 | 475 bp downstream | ||||||
Tssr8630 | transcription start site region 8630 | 435 bp downstream | ||||||
Tssr8631 | transcription start site region 8631 | 344 bp downstream | ||||||
Tssr8632 | transcription start site region 8632 | 15 bp upstream | ||||||
Tssr13598 | transcription start site region 13598 | 1798 bp upstream | ||||||
Tssr13599 | transcription start site region 13599 | 1756 bp upstream | ||||||
Tssr13600 | transcription start site region 13600 | 1601 bp upstream | ||||||
Tssr13601 | transcription start site region 13601 | 1053 bp upstream | ||||||
Tssr13602 | transcription start site region 13602 | 961 bp upstream | ||||||
Tssr13603 | transcription start site region 13603 | 806 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 07/22/2025 MGI 6.24 |
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