rs36267945 SNP Detail

Summary

• ID
  rs36267945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113281679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTCCTGA ACAGTTGCTC
  TCCTATATGC GCACCAGGGA CATCCAGCCT CGACCTCCTC CCCCTGCGAG CCCCAACCCA
  ACCCCAGCCC CAGAACAGCC CTGAGGACTT CACATAGCCA ATGCTTAGCA GTCTGCTTAC
  CTGTCTACCC ACTGCTGGAA GTTAAAGGCA CCTGGAGCTC TGAACCTGAC CAGGAGGGCC
  R
  TCTAGGTTGA TCAGTGCTGG CTGACAAGCT TTTTGCCCCC TGACTTCAGA AAGGCTTGGC
  ATGATCACCA CCTACCGCCT CATGACAACA ATAAAGCTCA TCTTACGCAG TCTCTGTCTC
  ATGGGTGTTG GAGAGGGAGA CTGAGGGACC CAGAGCCTGG GGTCACATCA AGAGTGAGGG
  AGTAATGATA ACTTCAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51842538	NES14762367	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36267945					SNP	A	A	A	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842538	NES14762367	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113281679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17838	CpG island 17838	1598 bp proximal
Cpne9	copine family member IX	within coordinates
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	907 bp downstream
Gm67816	predicted gene, 67816	903 bp downstream
Rr399829	regulatory region 399829	1654 bp upstream
Rr636483	regulatory region 636483	817 bp proximal
Rr636484	regulatory region 636484	1929 bp proximal