rs36268229 SNP Detail

Summary

• ID
  rs36268229
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:6097131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCCGCGCC GCCGGAAGTG AGGTGTCTTA CCCCCGAAGT
  TCCGGTTCGC AGGGGGTGGG GAGTGTTGTT AACCGGAGCG GCTGCCGCAG TCGCGGTGAT
  W
  GAGCGTGCTC GCGGCGCTGG GCTCCTGGTG AGTGGGCCTG GTCCTGATTG GGGTTGGGGG
  GTCGGCGTCT AGGACCTTGT CCTTTGGGGT CACTGCGATC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50575694	NES13653306	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36268229					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575694	NES13653306	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6097131 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10491	CpG island 10491			within coordinates
D530017H19Rik	RIKEN cDNA D530017H19 gene			within coordinates
Gm59262	predicted gene, 59262			612 bp downstream
Rr370438	regulatory region 370438			409 bp downstream
Rr405817	regulatory region 405817			1077 bp downstream
Rr543277	regulatory region 543277			429 bp distal
Rr543278	regulatory region 543278			1021 bp distal
Rr543279	regulatory region 543279			90 bp distal
Rr543280	regulatory region 543280			within coordinates
Rr543281	regulatory region 543281			14 bp proximal
Rr543282	regulatory region 543282			207 bp proximal
Rr543283	regulatory region 543283			270 bp proximal
Rr543284	regulatory region 543284			318 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr154538	transcription start site region 154538			988 bp downstream
Tssr154539	transcription start site region 154539			456 bp downstream
Tssr154540	transcription start site region 154540			60 bp downstream
Tssr154541	transcription start site region 154541			21 bp downstream
Tssr154542	transcription start site region 154542			within coordinates
Tssr157817	transcription start site region 157817			70 bp upstream
Tssr157818	transcription start site region 157818			309 bp downstream