rs36268491 SNP Detail

Summary

• ID
  rs36268491
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135399041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGTTGCCA AGGCCACACT CCACAGAAAT CCTTTGCCTG
  GCCCCTGCCT CTGGTGGCTG CGGCAATGCC TGCCCTCTTA GGCTTGGCTG CAGCATTTCA
  R
  TCGTGCTTCA TTATCGTGTC AACCCCTTCC CTGTGCTTCC TCTCATCTGG ATCCAAAGAG
  ACCTGCCTTT CTTTTATTTA AAAGATTTAT TTTAAATTCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51649028	NES14653480	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36268491					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51649028	NES14653480	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135399041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	1300 bp distal
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	1733 bp upstream
Rr585767	regulatory region 585767	1244 bp distal
Rr585768	regulatory region 585768	within coordinates
Tssr35827	transcription start site region 35827	1967 bp upstream
Tssr35828	transcription start site region 35828	1910 bp upstream
Tssr35829	transcription start site region 35829	1873 bp upstream
Tssr35830	transcription start site region 35830	1863 bp upstream
Tssr35831	transcription start site region 35831	1801 bp upstream
Tssr35832	transcription start site region 35832	1769 bp upstream
Tssr35833	transcription start site region 35833	1716 bp upstream
Tssr35834	transcription start site region 35834	1299 bp upstream