rs36268549 SNP Detail

Summary

• ID
  rs36268549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40273132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCTCCC TTCCTCCCCC
  TCTGAGTGTG TGTGTGTATG TGTGTGTGTG TATGTGTGTG TCAGCACACG TGGAGGTCAG
  AGGACTACTT GCAGCGGGCC TTTTACCCAC TAAGTTATCT TGTTGGCCCT AACGTATTCA
  TTTGAAAGTA AAATCACATT GGCATTAGAG GAAGCATAGG TGAATATACT AAAAGTTGGG
  R
  AAGAAATTTC TGTGAATACT TCCAAACATA GAAACCACAA GGAGAAGATT GGTTGATGTG
  GTCACATTAA AATAAACTTC AGCATACCAA AATTTACCTC AAGTTGAAAC ACAGAAAAAC
  CTCTACAAAA ATCCTCACAA ATATCAGATT GTTAATGTCT CTAATAGGGA AGAGTGCTTA
  GCGAGAAAAA GACAACAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50677922	NES13999857	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss322915568	CHEV_9_40169421	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36268549					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677922	NES13999857	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40273132 () rs orientation: forward

Symbol	Name	Function Class
Gm48114	predicted gene, 48114	1381 bp downstream
Gm68184	predicted gene, 68184	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates