rs36269463 SNP Detail

Summary

• ID
  rs36269463
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37465549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA CACTAGACTT CCTAACCTTT
  K
  GATTCACCGC TTCAAAATAA GACAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50673622	NES14003014	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36269463					SNP	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50673622	NES14003014	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37465549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21585	CpG island 21585	1364 bp distal
Gm46107	predicted gene, 46107	1191 bp upstream
Nrgn	neurogranin	1508 bp upstream
Rr676716	regulatory region 676716	1360 bp distal
Rr676717	regulatory region 676717	904 bp distal
Rr676718	regulatory region 676718	within coordinates
Rr676719	regulatory region 676719	904 bp proximal
Rr676720	regulatory region 676720	1167 bp proximal
Tssr84410	transcription start site region 84410	1361 bp upstream
Tssr84411	transcription start site region 84411	1384 bp upstream
Tssr84412	transcription start site region 84412	1392 bp upstream
Tssr84413	transcription start site region 84413	1418 bp upstream
Tssr84414	transcription start site region 84414	1440 bp upstream
Tssr88858	transcription start site region 88858	1542 bp upstream
Tssr88859	transcription start site region 88859	1512 bp upstream
Tssr88860	transcription start site region 88860	1271 bp upstream
Tssr88861	transcription start site region 88861	856 bp upstream