rs36271143 SNP Detail

Summary

• ID
  rs36271143
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:11190398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATAATCTTT TTATTGTTTC ACTTAATAAT AACTCTTGAC
  TCTTGGGCTA TAAGACAGAC AACTGCCCAA TCTGGCCTTG TAGGCTGTTC TTTACCATAC
  W
  TTGACATCAC TGAAAAACTG CATCTTTACC ATACATTGAC ATCACTGAAA AACTGCAGAT
  TCCGAAATCT TCTTAATCTA AGTCCATATT CTAGCCCTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss51170717	NES14318236	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs36271143					SNP	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51170717	NES14318236	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:11190398 () rs orientation: forward

Symbol	Name	Function Class
Gapdhrt	glyceraldehyde-3-phosphate dehydrogenase, retrotransposed	1376 bp downstream