rs36271267 SNP Detail

Summary

• ID
  rs36271267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:83105943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATAACTAG TCTGGACAGA GAACTTCTAA ATAAGATGAC
  CTAAAATATT CTGATCTGAC TCCAGGTAAA AGGAAACAAC CACCTATGTT ATGTGCCATA
  Y
  TCTCTGACCT CTCAAATGCT TGTAAAGGCT GGCATTTCCT TCTCCAATAA CATGCTCGTT
  TTCTTAAACC TTGAGTGTAA ACAACAGCAC CTTGCTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51971135	NES14983049	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T		C	T	T	C		T
ss145303850	ENSMUSSNP1376825	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss322735862	CHEV_8_84903213	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36271267					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971135	NES14983049	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83105943 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il15	interleukin 15			Intron
				Noncoding-Transcript-Variant
Tssr81957	transcription start site region 81957			249 bp upstream
Tssr81958	transcription start site region 81958			233 bp upstream
Tssr81959	transcription start site region 81959			766 bp downstream
Tssr81960	transcription start site region 81960			951 bp downstream
Tssr81961	transcription start site region 81961			987 bp downstream