rs36271341 SNP Detail

Summary

• ID
  rs36271341
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTTCCTC TCCTATTCTT
  GCAAACTTTT CATCCAATCG GAAACTAGAA GGATGCCGCT TGTGCATTCT GGCTCACTAG
  CCGACATCCC GGTCCCCCGC CGTCACATGC TGTTATTGAA CTTGGGAAAT ATCCCAGTCC
  GGAGTGCACA AGCCTCTTCC AGACCCACCT CCCGGCCGTA GCCGGGTCAC AGGAAAGCCC
  R
  GCGTCGTTGT GATCCGGGAT TTTCCAATTT TCCCAGAGGA TTCGCATCCG GTTGCTGGGA
  GAGGCTCCGT GGGGGGTCCG CGGCCAGGGA GGGGAGTGGG GCCGGGGTGG GGATAAGAAG
  TGGAGGGTGG GCAGAGCGAG AATCGCCAAC GCTGGAAAGC GCTGAGCTTG CCTGACGCTC
  TCCTCTCCGT ACTTGGTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51618308	NES14659879	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	G	A	A	A		A	A	A		A
ss135871374	ENSMUSSNP35604	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				A
ss320956928	CHEV_3_127493592	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36271341					SNP	G	G	G	A	A	G	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618308	NES14659879	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	546 bp distal
Cpgi13801	CpG island 13801	within coordinates
Gm56817	predicted gene, 56817	417 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	752 bp distal
Rr584861	regulatory region 584861	855 bp distal
Rr584862	regulatory region 584862	428 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	141 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1472 bp downstream
Tssr31595	transcription start site region 31595	1460 bp downstream
Tssr31596	transcription start site region 31596	1427 bp downstream
Tssr31597	transcription start site region 31597	1387 bp downstream
Tssr31598	transcription start site region 31598	1364 bp downstream
Tssr31599	transcription start site region 31599	865 bp downstream
Tssr31600	transcription start site region 31600	797 bp downstream
Tssr31601	transcription start site region 31601	745 bp downstream
Tssr31602	transcription start site region 31602	691 bp downstream
Tssr31603	transcription start site region 31603	673 bp downstream
Tssr31604	transcription start site region 31604	549 bp downstream
Tssr31605	transcription start site region 31605	35 bp downstream
Tssr31606	transcription start site region 31606	126 bp upstream
Tssr31607	transcription start site region 31607	364 bp upstream
Tssr31608	transcription start site region 31608	432 bp upstream
Tssr31609	transcription start site region 31609	483 bp upstream
Tssr31610	transcription start site region 31610	592 bp upstream
Tssr31611	transcription start site region 31611	700 bp upstream
Tssr35598	transcription start site region 35598	916 bp upstream
Tssr35599	transcription start site region 35599	834 bp upstream
Tssr35600	transcription start site region 35600	806 bp upstream
Tssr35601	transcription start site region 35601	773 bp upstream
Tssr35602	transcription start site region 35602	456 bp upstream