rs36271380 SNP Detail

Summary

• ID
  rs36271380
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4842546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAAATCTA TTTAAAATCC TTGGTGGGAC TTCACCTGAT
  GTGTACTGCG AGACTGCTAG TCATAAAGTT AACGCTGAAG TGACAGCAGG TGTCTGAACT
  S
  TAAGAAGTTT CAATGTGCTT ATGAGTGGAA TGTTTTCCAC TCCCTACCCT AGATACTCTG
  CTTTCTTTGT CTGTTACTGT TTAAGTTAAA TTTGCCCTCT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50908868	NES13484788	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36271380					SNP	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908868	NES13484788	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4842546 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	124 bp downstream
Mrpl15	mitochondrial ribosomal protein L15	886 bp downstream
Rr407423	regulatory region 407423	1993 bp distal
Tssr5799	transcription start site region 5799	1201 bp downstream