rs36271634 SNP Detail

Summary

• ID
  rs36271634
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34922903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAATAGGAA CGAGCGTGGG CGACCCCGTG TCACTGTTTC
  AGTTTGTCCT GTTCAGTTGG TTGAGTGAGC GACAGAGAGC AAACAATAAA GTGGAAGGCA
  R
  AGTCACCCTC AAGAAGACGA TTATGTTCTT TTTCTATCCC AAAAACCTGA TTGTGACATG
  TCATTGTGAA ATAAACGTTT TGTTCTTTAA AAATAAGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50525757	NES14089096	PERLEGEN	MM_PANEL2	f	SNP	A			G	G	A	G	G		G	G	G	G		A
ss149109266	ENSMUSSNP455730	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			A
ss322578193	CHEV_8_35518803	CHEVERUD	SCREENING_POP	f	SNP									A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36271634					SNP	A	A	A	G	G	A	G	G	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50525757	NES14089096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34922903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20247	CpG island 20247	47 bp distal
Gm39159	predicted gene, 39159	within coordinates
Gm45349	predicted gene 45349	within coordinates
Gm46038	predicted gene, 46038	1169 bp upstream
Rr400818	regulatory region 400818	120 bp downstream